Research software

DNA origami designer v.2.0

This software package distributes a set of programs for designing DNA origami structures using a Java sequence editor.

Release date: 7 May 2009.
Authors: Ebbe S. Andersen, Morten M. Nielsen

Platform: Mac, Linux

RNA folder v. 1.11

Released July 10th, 2008
Authors: Thomas B. Hansen

Platform: Windows

Pubmed Feeder

Keeps you updated on your favorite Pubmed search terms!

Authors: Thomas B. Hansen
Platform: Windows

SARSE - Semi-Automated RNA Sequence Editor

Platform: Mac, Linux

Genome Office System

Genome Office is the beginning of a web based framework that aims to provide much better overviews of the large molecular biology data volumes of the future. It is a freely available (GNU license) prototype.

Authors: Niels Larsen
Platform: Mac, Linux

 
 
     
     
 

RNAi highlights

The DNA 'origami' method was extended into 3D to create an addressable DNA box on the nanometre scale that can be opened by externally supplied DNA 'keys'. The study appeared online in Nature, May 6, 2009:

 
 

News

New single molecule study of hnRNP A1 interaction with telomere DNA G-quadruplex structures

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The DNA 'origami' method was extended into 3D to create an addressable DNA box on the nanometre scale that can be opened by externally supplied DNA 'keys'. The study appeared online at Nature, May 6, 2009: [Paper] [Podcast]

 

Kasper Jahn has won the EliteForsk travel award amounting to 250.000 DKK for his research on the application of DNA self-assembly chemistry for bringing together proteins and metal particles at the nano-scale.
Read the news here (in danish)

 
The SARSE - DNA origami package version 1.0 was released on the CDNA website (see intro page). The package makes it really easy to design complex DNA nanostructures. The package has a nice tutorial that goes through the steps involved in creating the logo of the University of Aarhus in DNA (see tutorial).
 

Ebbe S Andersen and colleagues introduce their ACS nano paper about a software program for designing DNA origami structures and the characterization of DNA dolphins with flexible tails. The full article may be found at this DOI.